Chinese Journal of Schistosomiasis Control ›› 2024, Vol. 36 ›› Issue (4): 376-383.

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Development and preliminary application of a multiplex PCR assay for simultaneous detection of four intestinal parasites in goats

LI Yilong1△, MU Xuanru1△, XU Hui1, LUO Xiaoping2, YU Runzi1, XU Xinyi1, YANG Linlin1, YU Xingang1*, HONG Yang3, 4*   

  1. 1 School of Life Science and Engineering, Foshan University, Foshan, Guangdong 528231, China; 2 Veterinary Research Institute, Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences, China; 3 National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), National Health Commission Key Laboratory of Parasite and Vector Biology, Shanghai 200025, China; 4 Hainan Tropical Diseases Research Center (Hainan Sub⁃Center,Chinese Center for Tropical Diseases Research), Haikou, Hainan 571199, China
  • Online:2024-08-25 Published:2024-09-03

一种同时检测4种山羊肠道寄生虫多重PCR方法的建立与初步应用

李奕龙1△,穆宣儒1△,许辉1,罗晓平2,余润梓1,许欣怡1,杨琳琳1,余新刚1*,洪炀3, 4*   

  1. 1 佛山科学技术学院生命科学与工程学院(广东 佛山 528231);2内蒙古自治区农牧业科学院兽医研究所;3 中国疾病预防控制中心寄生虫病预防控制所(国家热带病研究中心)、国家卫生健康委员会寄生虫病原与媒介生物学重点实验室(上海 200025);4 海南热带病研究中心(国家热带病研究中心海南分中心)(海南 海口 571199)
  • 作者简介:李奕龙, 男,硕士研究生。研究方向:兽医寄生虫学与寄生虫病学 穆宣儒, 女,硕士研究生。研究方向:兽医寄生虫学与寄生虫病学 △ 共同第一作者
  • 基金资助:
    广东省基础与应用基础研究基金联合基金(2022A1515110474)

Abstract: Objective To develop a multiplex PCR assay for simultaneous detection of four intestinal parasites, including Giardia duodenalis, Cryptosporidium parvum, Enterocytozoon bieneusi and Moniezia, and to preliminarily evaluate its detection efficiency. Methods Four pairs of specific primers were designed based on the conserved sequences of the corresponding genes of G. duodenalis (GenBank accession number: XM_001710026.2), C. parvum (GenBank accession number: XM_626998.1), E. bieneusi (GenBank accession number: KJ719492.1) and Moniezia (GenBank accession number: OM296991.1) retrieved from the GenBank database, and a multiplex PCR assay for simultaneous detection of G. duodenalis, C. parvum, E. bieneusi and Moniezia was developed and optimized. A total of 116 fresh goat stool samples were collected from four goat farms in Zhanjiang City, Guangdong Province during the period from October to December 2022, including 96 samples used for evaluating the detection efficacy of the multiplex PCR assay, and 20 samples as baseline controls for sample testing. Genomic DNA extracted from 96 goat stool samples was tested using the single⁃target PCR assay and the developed multiplex PCR assay, and the sensitivity, specificity, positive predictive value, and negative predictive value of the multiplex PCR assay were evaluated for detection of G. duodenalis, C. parvum, E. bieneusi and Moniezia DNA in goat stool samples with the single⁃target PCR assay as the gold standard. Results The multiplex PCR assay developed in this study allowed simultaneous amplification of specific gene fragments of G. duodenalis, C. parvum, E. bieneusi and Moniezia, with 1 400, 755, 314 bp and 585 bp in sizes, respectively, and the detection limit was 102 and higher copies of parasite DNA clones, while the multiplex PCR assay was negative for gene amplification of Schistosoma japonicum, Fasciola hepatica, Echinococcus granulosus, Blastocystis hominis and Homalogaster paloniae. Single⁃target PCR assay and the developed multiplex PCR assay were employed to test DNA samples extracted from 96 goat stool samples, and single⁃target PCR assay tested positive in 40 goat stool samples (41.67%), including 39 positive samples tested with the multiplex PCR assay, with a mean coincidence rate of 97.50% (39/40). The multiplex PCR assay tested positive for G. duodenalis DNA in 26 goat stool samples (27.10%), C. parvum DNA in 22 samples (22.90%), E. bieneusi DNA in 24 samples (25.00%), and Moniezia in 9 samples (9.40%), which was consistent with the detection using the single⁃target PCR assay. The sensitivity, negative predictive value, and positive predictive value of the multiplex PCR assay were 96.15%, 95.83%, 100.00% and 100.00%, 98.90%, 98.92%, 100.00% and 100.00%, 100.00%, 100.00%, 100.00% and 100.00% for detection of G. duodenalis, C. parvum, E. bieneusi and Moniezia DNA in goat stool samples, respectively, if the single⁃target PCR assay served as the gold standard. Conclusion A highly sensitive and specific multiplex PCR assay has been developed for simultaneous detection of G. duodenalis, C. parvum, E. bieneusi and Moniezia in goats, which is suitable for rapid, large⁃scale screening of intestinal parasites in sheep stool samples.

Key words: Intestinal parasite, Giardia duodenalis, Cryptosporidium parvum, Enterocytozoon bieneusi, Moniezia, Multiplex PCR, Goat

摘要: 目的 建立一种可同时检测十二指肠贾第虫、微小隐孢子虫、毕氏肠微孢子虫和莫尼茨绦虫等4种山羊肠道寄生虫的多重PCR检测方法,并初步评估其检测效能。方法 基于GenBank中十二指肠贾第虫(GenBank登录号:XM_001710026.2)、微小隐孢子虫(GenBank登录号:XM_626998.1)、毕氏肠微孢子虫(GenBank登录号:KJ719492.1)和莫尼茨绦虫(GenBank登录号:OM296991.1)相应基因的保守序列设计4对特异性引物,建立并优化可同时检测上述4种寄生虫的多重PCR方法。2022年10—12月,从广东省湛江市4个山羊养殖场采集116份新鲜山羊粪便样本,其中96份用于所建立多重PCR方法的检测效能评价、20份作为样本检测的本底对照。分别采用单病原PCR检测方法及本研究所建立的多重PCR方法,对96份山羊粪便DNA样本进行检测。以单病原PCR检测结果为金标准,计算多重PCR法的检测灵敏度、特异度、阳性预测值和阴性预测值。 结果 本研究所建立的多重PCR方法可同时扩增出十二指肠贾第虫、微小隐孢子虫、毕氏肠微孢子虫和莫尼茨绦虫特异性基因片段,其大小分别为1 400、755、314 bp和585 bp,检出限为≥ 102 拷贝数的病原DNA克隆质粒;该方法对日本血吸虫、羊前后盘吸虫、细粒棘球绦虫、芽囊原虫和平腹吸虫基因扩增结果均为阴性。采用单病原PCR和所建立的多重PCR方法检测96份山羊粪便DNA样本,40份(40/96,41.67%)粪便DNA经单病原PCR检测出现阳性扩增产物,其中39份经多重PCR检测亦出现阳性扩增产物,平均符合率为97.50%(39/40)。96份样本中,多重PCR方法分别检出十二指肠贾第虫、微小隐孢子虫、毕氏肠微孢子虫、莫尼茨绦虫感染阳性26(27.10%)、22(22.90%)、24(25.00%)、9份(9.40%),与单病原PCR检测结果一致。以单病原PCR检测结果为金标准,多重PCR法对山羊粪便样本中十二指肠贾第虫、毕氏肠微孢子虫、微小隐孢子虫和莫尼茨绦虫DNA检测灵敏度分别为96.15%、95.83%、100.00%、100.00%,阴性预测值分别为98.90%、98.92%、100.00%、100.00%,阳性预测值均为100.00%。结论 本研究建立了一种可同时检测十二指肠贾第虫、微小隐孢子虫、毕氏肠微孢子虫和莫尼茨绦虫等4种山羊常见寄生虫的多重PCR方法,该方法灵敏度高、特异性好,适用于大规模羊群粪便样本快速筛查。

关键词: 肠道寄生虫, 十二指肠贾第鞭毛虫, 微小隐孢子虫, 毕氏肠微孢子虫, 莫尼茨绦虫, 多重PCR法, 山羊

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