中国血吸虫病防治杂志(中英文) ›› 2025, Vol. 37 ›› Issue (2): 144-151.

• 论著 • 上一篇    下一篇

基于线粒体DNA的我国白蛉种群遗传进化研究

李中秋 1△,魏子昕 2△,周正斌1*,张仪1*   

  1. 1 中国疾病预防控制中心寄生虫病预防控制所(国家热带病研究中心)、国家卫生健康委员会寄生虫病原与媒介生物学重点实验室、WHO热带病合作中心、科技部国家级热带病国际联合研究中心、传染病溯源预警与智能决策全国重点实验室、上海交通大学医学院⁃国家热带病研究中心全球健康学院(上海 200025);2 上海市疾病预防控制中心(上海 201107)
  • 出版日期:2025-04-25 发布日期:2025-05-19
  • 通讯作者: 周正斌 zhouzb@nipd.chinacdc.cn;张仪 zhangyi@nipd.chinacdc.cn
  • 作者简介:李中秋,男,助理研究员。研究方向:媒介生物预防控制 魏子昕,女,医师。研究方向:病原微生物
  • 基金资助:
    国家重点研发计划(2023YFA1801000);国家科技重大专项(2017ZX10303404);国家科技基础条件平台国家寄生虫资源库项目(NPRC⁃2019⁃194⁃30);上海市青年科技英才扬帆计划(21YF1452200);中国疾病预防控制中心寄生虫病预防控制所(国家热带病研究中心)科技创新支撑计划(LY2024008)

Population genetic structure of sandflies in China based on mitochondrial DNA

LI Zhongqiu1△, WEI Zixin2△, ZHOU Zhengbin1*, ZHANG Yi1*   

  1. 1 National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), National Health Commission Key Laboratory of Parasite and Vector Biology, WHO Collaborating Center for Tropical Diseases, National Center for International Research on Tropical Diseases, Ministry of Science and Technology, National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, School of Global Health, Shanghai Jiao Tong University School of Medicine and Chinese Center for Tropical Diseases Research, Shanghai 200025, China; 2 Shanghai Center for Disease Control and Prevention, Shanghai 201107, China
  • Online:2025-04-25 Published:2025-05-19

摘要: 目的 分析我国内脏利什曼病流行区白蛉种群遗传进化多样性,为内脏利什曼病和媒介白蛉防控提供参考。方法 2024年6—9月,于我国内脏利什曼病主要流行区山西省、陕西省、河南省、甘肃省、四川省及新疆维吾尔自治区选取16个采样点,于各采样点羊圈、鸡舍、窑洞、牛棚、猪圈等环境通过诱蛉灯和人工捕蛉管捕捉白蛉。单只白蛉样本经磷酸盐缓冲液(phosphate⁃buffered saline,PBS)清洗后,提取白蛉样本DNA,采用通用引物对细胞色素c氧化酶亚基Ⅰ(cytochrome c oxidase subunit 1,COI)基因进行PCR扩增。采用BLAST程序对COI基因进行分析和检索,采用ClustalX 1.83和MEGA 7.0软件对COI基因序列进行比对,采用MEGA 7.0软件分析基因序列碱基组成及变异位点特征。采用DnaSP 5.10软件计算基因序列中单倍型数目、分离位点总数、单倍型多样性指数、核苷酸多样性指数和平均核苷酸差异数等遗传多样性指标,并对其进行Tajima’s D中性检验;采用DnaSP 5.10软件包筛选单倍型;采用Network 5.0软件绘制白蛉样本单倍型网络图;采用MEGA 7.0软件进行基因序列编辑、比对,计算不同地区蛉种遗传距离,并以邻接法构建系统发育树。结果 2024年6—9月,累计于16个采样点捕获白蛉466只,COI基因扩增测序后得到430条基因序列,扩增片段长度为652 ~ 688 bp。经BLAST比对,捕获的白蛉样本分别为中华白蛉、鳞喙司蛉、歌乐山司蛉、四川白蛉和长管白蛉。430条白蛉样本基因序列中,共有单倍型251种(占50.5%),平均单倍型多样性指数为0.885、平均核苷酸多样性指数为0.257、平均核苷酸差异数为160.761。山西省阳泉市和河南省三门峡市白蛉种群Tajima’s D值分别为-0.92和-1.73,其他采样点捕获的白蛉种群Tajima’s D值均> 0。单倍型分析得到50种单倍型,分为2个类群,类群1包括29种单倍型,均具有较高同源性;类群2包括21种单倍型。不同采样点白蛉平均遗传距离为0.000 ~ 0.604。系统发育树上, 5种白蛉样本分别进化为不同分支,置信度均为100%。结论 我国内脏利什曼病主要流行区5种白蛉群体COI基因表现出较高遗传多态性,COI可作为白蛉群体遗传结构分析的标志基因。

关键词: 白蛉, 司蛉, 内脏利什曼病, 单倍型, 细胞色素c氧化酶亚基Ⅰ, 群体遗传结构, 系统发育分析

Abstract: Objective To investigate the genetic diversity of sandfly populations in endemic areas of visceral leishmaniasis in China, so as to provide references insights into management of visceral leishmaniasis and the vector sandflies. Methods Sixteen sampling sites were selected from main endemic foci of visceral leishmaniasis in China from June to September 2024, including Shanxi Province, Shaanxi Province, Henan Province, Gansu Province, Sichuan Province, and Xinjiang Uygur Autonomous Region. Sandflies were captured using light traps and manual aspirators from sheep pens, chicken coops, cave dwellings, bovine sheds, and pig pens at each sampling site. A single sandfly sample was washed in phosphate⁃buffered saline (PBS), and genomic DNA was extracted from sandfly samples. Cytochrome oxidase subunit 1 (COI) gene was amplified using PCR assay with universal primers, and analyzed and retrieved with the nucleotide sequence analysis tool (BLAST) software, and the sequence of COI gene was aligned with the ClustalX 1.83 and MEGA 7.0 software. The base composition and variation site of the COI gene sequence were analyzed using the software MEGA 7.0, and the number of haplotypes, total number of segregating sites, haplotype diversity, nucleotide diversity, and average nucleotide differences were calculated in the COI gene sequence using the software DnaSP 5.10, followed by Tajima's D test for neutrality. Haplotypes were screened using the software DnaSP 5.10, and the haplotype network map of sandfly samples was plotted using the software Network 5.0. MEGA 7.0 software was employed for gene sequence editing and alignment, and calculation of genetic distances among sandfly species sampled from different regions, and a phylogenetic tree was built with a neighbor⁃joining method. Results A total of 466 sandflies were captured from 16 sampling sites in China from June to September 2024, and 430 gene sequences were yielded following PCR amplification and sequencing of the COI gene, with 652 to 688 bp in the length of amplification fragments. The captured sandfly samples were characterized as Phlebotomus chinensis, Sergentomyia squamirostris, Se. koloshanensis, Ph. sichuanensis, and Ph. longiductus following the COI gene sequence alignment in BLAST. A total of 251 haplotypes were identified in the 430 gene sequences from sandfly samples (50.5%), and the average haplotype diversity, nucleotide diversity and average number of nucleotide difference were 0.885, 0.257 and 160.761, respectively. The Tajima's D values were -0.92 for sandfly populations from Yangquan City,  Shanxi Province and -1.73 for sandfly populations from Sanmenxia City, Henan Province, and were all more than 0 for sandfly populations from other sampling sites. Haplotype analysis identified 50 haplotypes, which were classified into two haplogroups. Heplogroup 1 included 29 haplotypes, which had a high homology, and heplogroup 2 included 21 haplotypes. The average genetic distance was 0.000 to 0.604 among sandfly samples from different sampling sites, and phylogenetic analysis revealed that the five sandfly species were clustered into distinct clades, all with 100% clade confidence. Conclusions There is a high genetic polymorphism in the COI gene from five sandfly populations in main endemic foci of visceral leishmaniasis in China, and COI gene may serve as a marker gene for analysis of the genetic structure of sandfly populations.

Key words: Sandfly, Sergentomyia, Visceral leishmaniasis, Haplotype, Cytochrome c oxidase subunit 1, Population genetic structure, Phylogenetic analysis

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