中国血吸虫病防治杂志 ›› 2023, Vol. 35 ›› Issue (2): 121-.

• 论著 • 上一篇    下一篇

基于无人机影像深度学习算法的血吸虫病家畜传染源智能识别研究

薛靖波1, 2,夏尚1, 2,李召军3,王心怡1,黄良瑜1,何润超1,李石柱1, 2*   

  1. 1 中国疾病预防控制中心寄生虫病预防控制所(国家热带病研究中心)、国家卫生健康委员会寄生虫病原与媒介生物学重点实验室、WHO热带病合作中心、国家级热带病国际联合研究中心(上海 200025);2 上海交通大学医学院⁃国家热带病研究中心全球健康学院(上海 200025);3 江西省寄生虫病防治研究所、江西省血吸虫病预防与控制重点实验室
  • 出版日期:2023-04-15 发布日期:2023-05-19
  • 作者简介:薛靖波,男,硕士,副研究员。研究方向:空间流行病学
  • 基金资助:
    国家重点研发计划项目(2021YFC2300800, 2021YFC2300803);国家自然科学基金委员会国际(地区)合作与交流项目(32161143036);国家自然科学基金(82173633,81960374)

Intelligent identification of livestock, a source of Schistosoma japonicum infection, based on deep learning of unmanned aerial vehicle images

XUE Jingbo1,2, XIA Shang1,2, LI Zhaojun3, WANG Xinyi1, HUANG Liangyu1, HE Runchao1, LI Shizhu1,2*   

  1. 1 National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research), National Health Commission Key Laboratory of Parasite and Vector Biology, WHO Collaborating Centre for Tropical Diseases, National Center for International Research on Tropical Diseases, Shanghai 200025, China; 2 School of Global Health,Shanghai Jiao Tong University School of Medicine and Chinese Center for Tropical Diseases Research, Shanghai 200025, China; 3 Jiangxi Provincial Institute of Parasitic Diseases Control, Jiangxi Provincial Key Laboratory of Schistosomiasis Prevention and Control, China
  • Online:2023-04-15 Published:2023-05-19

摘要: 目的 建立一种基于无人机影像深度学习算法的智能识别模型,初步评价其用于血吸虫病家畜传染源耕牛远程识别和监测管理的效果。方法 以环鄱阳湖地区有螺洲滩作为研究区域,采用无人机航拍采集该区域影像数据集。对数据集进行增强处理,并使用数据标注工具VGG Image Annotator标记样本数据库中的耕牛,建立耕牛形态识别标签。基于Mask R⁃卷积神经网络(CNN)深度学习算法建立智能识别模型用于识别耕牛分布,采用准确率、精确率、召回率、F1得分和平均精确率等指标对模型识别耕牛效果进行评价。结果 共获取200幅无人机航拍原始影像,对影像数据增强处理后获得410幅影像,标记耕牛识别训练样本2 860个。构建的Mask R⁃CNN深度学习识别模型在迭代200轮后收敛,模型准确率为88.01%、精确率为92.33%、召回率为94.06%、F1得分为93.19%、平均精确率为92.27%,可有效检测和分割耕牛形态特征。结论 基于无人机影像深度学习算法构建的Mask R⁃CNN模型识别耕牛准确性较高,可用于血吸虫病家畜传染源远程智能识别、监测和管理。  

关键词: 血吸虫病, 传染源, 深度学习, 无人机, 图像识别, 卷积神经网络, 耕牛

Abstract: Objective To develop an intelligent recognition model based on deep learning algorithms of unmanned aerial vehicle (UAV) images, and to preliminarily explore the value of this model for remote identification, monitoring and management of cattle, a source of Schistosoma japonicum infection. Methods Oncomelania hupensis snail⁃infested marshlands around the Poyang Lake area were selected as the study area. Image datasets of the study area were captured by aerial photography with UAV and subjected to augmentation. Cattle in the sample database were annotated with the annotation software VGG Image Annotator to create the morphological recognition labels for cattle. A model was created for intelligent recognition of livestock based on deep learning⁃based Mask R⁃convolutional neural network (CNN) algorithms. The performance of the model for cattle recognition was evaluated with accuracy, precision, recall, F1 score and mean precision. Results A total of 200 original UAV images were obtained, and 410 images were yielded following data augmentation. A total of 2 860 training samples for working cattle recognition were labeled. A total of 2 860 training samples of cattle recognition were labeled. The created deep learning⁃based Mask R⁃CNN model converged following 200 iterations, with an accuracy of 88.01%, precision of 92.33%, recall of 94.06%, F1 score of 93.19%, and mean precision of 92.27%, and the model was effective to detect and segment the morphological features of cattle. Conclusion The deep learning⁃based Mask R⁃CNN model is highly accurate for recognition of cattle based on UAV images, which is feasible for remote intelligent recognition, monitoring, and management of the source of S. japonicum infection.

Key words: Schistosomiasis, Source of infection, Deep learning, Unmanned aerial vehicle, Image recognition, Convolutional neural network, Cattle

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